Lab Member Publications

Prevelige Publications | Lab Member Publications

Braga

• Braga CA, Carvalho D, Lara FA, Cortines JR, Moore SD, Prevelige PE Jr, Foguel D. (2007) An aggregation-prone intermediate species is present in the unfolding pathway of the monomeric portal protein of bacteriophage P22: implications for portal assembly. Biochemistry 46:7353-64.

Cortines

• Cortines JR, Monroe EB, Kang S, Prevelige PE Jr (2011) A retroviral chimeric capsid protein reveals the role of the N-terminal β-hairpin in mature core assembly. J Mol Biol. 410:641-52.
• Braga CA, Carvalho D, Lara FA, Cortines JR, Moore SD, Prevelige PE Jr, Foguel D. (2007) An aggregation-prone intermediate species is present in the unfolding pathway of the monomeric portal protein of bacteriophage P22: implications for portal assembly. Biochemistry 46:7353-64.

Douglas

• Douglas, C. C., D. Thomas, et al. (2004). "Investigation of N-terminal domain charged residues on the assembly and stability of HIV-1 CA." Biochemistry 43: 10435-41.

Fu

• Fu, C. Y., Uetrecht, C., Kang, S., Morais, M. C., Heck, A. J., Walter, M. R. & Prevelige, P. E., Jr. (2010) A docking model based on mass spectrometric and biochemical data describes phage packaging motor incorporation. Mol Cell Proteomics 9, 1764-1773.
• Fu, C.Y., and Prevelige, P.E., Jr. (2009). In vitro incorporation of the phage Phi29 connector complex. Virology 394, 149-153.
• Fu, C. Y., M. C. Morais, et al. (2007) Molecular dissection of o29 scaffolding protein function in an in vitro assembly system. J Mol Biol 366:1161-73.
• Fu, C. Y. and P. E. Prevelige, Jr. (2006). "Dynamic motions of free and bound O29 scaffolding protein identified by hydrogen deuterium exchange mass spectrometry." Protein Sci 15: 731-43.

Kang

• Uchida M, Morris DS, Kang S, Jolley CC, Lucon J, Liepold LO, LaFrance B, P.E. Prevelige PE, Douglas T, (2012) Site-directed coordination chemistry with P22 virus-like particles. Langmuir, 28:1998-2006
• Kang, S., Uchida, M., O'Neil, A., Li, R., Prevelige, P. E. & Douglas, T. (2010) Implementation of p22 viral capsids as nanoplatforms. Biomacromolecules 11, 2804-2809.
  
• Monroe, E. B., Kang, S., Kyere, S. K., Li, R. & Prevelige, P. E., Jr. (2010) Hydrogen/deuterium exchange analysis of HIV-1 capsid assembly and maturation. Structure 18, 1483-1491.
  
• Fu, C. Y., Uetrecht, C., Kang, S., Morais, M. C., Heck, A. J., Walter, M. R. & Prevelige, P. E., Jr. (2010) A docking model based on mass spectrometric and biochemical data describes phage packaging motor incorporation. Mol Cell Proteomics 9, 1764-1773.
• Kang, S., Mou, L., Lanman, J., Velu, S., Brouillette, W.J., and Prevelige, P.E., Jr. (2009). Synthesis of biotin-tagged chemical cross-linkers and their applications for mass spectrometry. Rapid Commun Mass Spectrom 23, 1719-1726.
  
• Kang, S., Oltrogge, L.M., Broomell, C.C., Liepold, L.O., Prevelige, P.E., Young, M., and Douglas, T. (2008). Controlled assembly of bifunctional chimeric protein cages and composition analysis using noncovalent mass spectrometry. Journal of the American Chemical Society 130, 16527-16529.
• Nemecek D, Gilcrease EB, Kang S, Prevelige PE Jr, Casjens S, Thomas GJ Jr (2007). Subunit conformations and assembly states of a DNA-translocating motor: the terminase of bacteriophage P22. J Mol Biol 374:817-36.
• Kang S, Poliakov A, Sexton J, Renfrow MB, Prevelige PE Jr.(2008) Probing Conserved Helical Modules of Portal Complexes by Mass Spectrometry-based Hydrogen/Deuterium Exchange.
  J Mol Biol. 381:772-84.
• Kang S, Lander GC, Johnson JE, Prevelige PE. (2008) Development of bacteriophage p22 as a platform for molecular display: genetic and chemical modifications of the procapsid exterior surface. Chembiochem 9:514-8.
• Kang, S. and P. E. Prevelige, Jr. (2005). "Domain study of bacteriophage p22 coat protein and characterization of the capsid lattice transformation by hydrogen/deuterium exchange." J Mol Biol 347: 935-48.
• Kang, S., A. M. Hawkridge, et al. (2006). "Identification of subunit-subunit interactions in bacteriophage P22 procapsids by chemical cross-linking and mass spectrometry." J Proteome Res 5: 370-7.

Lanman

• Lanman, J. and P. E. Prevelige, Jr. (2005). "Kinetic and mass spectrometry-based investigation of human immunodeficiency virus type 1 assembly and maturation." Adv Virus Res 64: 285-309.
• Douglas, C. C., D. Thomas, et al. (2004). "Investigation of N-terminal domain charged residues on the assembly and stability of HIV-1 CA." Biochemistry 43: 10435-41.
• Lanman, J., T. T. Lam, et al. (2004). "Key interactions in HIV-1 maturation identified by hydrogen-deuterium exchange." Nat Struct Mol Biol 11: 676-7.
• Lanman, J. and P. E. Prevelige, Jr. (2004). "High-sensitivity mass spectrometry for imaging subunit interactions: hydrogen/deuterium exchange." Curr Opin Struct Biol 14: 181-8.
• Lanman, J., T. T. Lam, et al. (2003). "Identification of novel interactions in HIV-1 capsid protein assembly by high-resolution mass spectrometry." J Mol Biol 325: 759-72.
• Lam, T. T., J. K. Lanman, et al. (2002). "Mapping of protein:protein contact surfaces by hydrogen/deuterium exchange, followed by on-line high-performance liquid chromatography-electrospray ionization Fourier-transform ion-cyclotron-resonance mass analysis." J Chromatogr A 982: 85-95.
• Lanman, J., J. Sexton, et al. (2002). "Kinetic analysis of the role of intersubunit interactions in human immunodeficiency virus type 1 capsid protein assembly in vitro." J Virol 76: 6900-8.
• Lanman, J., R. Tuma, et al. (1999). "Identification and characterization of the domain structure of bacteriophage P22 coat protein." Biochemistry 38: 14614-23.

Li

• Tang J, Lander GC, Olia AS, Li R, Casjens S, Prevelige P Jr, Cingolani G, Baker TS, Johnson JE.(2011) Peering down the barrel of a bacteriophage portal: the genome packaging and release valve in p22. Structure. 19:496-502
• Reichhardt C, Uchida M, O'Neil A, Li R, Prevelige PE, Douglas T. (2011) Templated assembly of organic-inorganic materials using the core shell structure of the P22 bacteriophage. Chem Commun (Camb). 47:6326-8
• Tang J, Lander GC, Olia AS, Li R, Casjens S, Prevelige P Jr, Cingolani G, Baker TS, Johnson JE.(2011) Peering down the barrel of a bacteriophage portal: the genome packaging and release valve in p22. Structure. 19:496-502.
• Monroe, E. B., Kang, S., Kyere, S. K., Li, R. & Prevelige, P. E., Jr. (2010) Hydrogen/deuterium exchange analysis of HIV-1 capsid assembly and maturation. Structure 18, 1483-1491.
• Kang, S., Uchida, M., O'Neil, A., Li, R., Prevelige, P. E. & Douglas, T. (2010) Implementation of p22 viral capsids as nanoplatforms. Biomacromolecules 11, 2804-2809.
• Lander, G.C., Khayat, R., Li, R., Prevelige, P.E., Potter, C.S., Carragher, B., and Johnson, J.E. (2009). The P22 tail machine at subnanometer resolution reveals the architecture of an infection conduit. Structure 17:789-799

Monroe

• Monroe, E. B., Kang, S., Kyere, S. K., Li, R. & Prevelige, P. E., Jr. (2010) Hydrogen/deuterium exchange analysis of HIV-1 capsid assembly and maturation. Structure 18, 1483-1491.

Moore

• Cingolani, G., S. D. Moore, et al. (2002). "Preliminary crystallographic analysis of the bacteriophage P22 portal protein." J Struct Biol 139: 46-54.
• Moore, S. D. and P. E. Prevelige, Jr. (2002). "DNA packaging: a new class of molecular motors." Curr Biol 12: R96-8.
• Moore, S. D. and P. E. Prevelige, Jr. (2002). "Bacteriophage p22 portal vertex formation in vivo." J Mol Biol 315: 975-94.
• Rodriguez-Casado, A., S. D. Moore, et al. (2001). "Structure of bacteriophage P22 portal protein in relation to assembly: investigation by Raman spectroscopy." Biochemistry 40: 13583-91.
• Moore, S. D. and P. E. Prevelige, Jr. (2001). "Structural transformations accompanying the assembly of bacteriophage P22 portal protein rings in vitro." J Biol Chem 276: 6779-88.

Morris

• Uchida M, Morris DS, Kang S, Jolley CC, Lucon J, Liepold LO, LaFrance B, P.E. Prevelige PE, Douglas T, (2012) Site-directed coordination chemistry with P22 virus-like particles. Langmuir, 28:1998-2006.

Parker

• Parker, M. H., C. G. Brouillette, et al. (2001). "Kinetic and calorimetric evidence for two distinct scaffolding protein binding populations within the bacteriophage P22 procapsid." Biochemistry 40: 8962-70.
• Sun, Y., M. H. Parker, et al. (2000). "Structure of the coat protein-binding domain of the scaffolding protein from a double-stranded DNA virus." J Mol Biol 297: 1195-202.
• Parker, M. H. and P. E. Prevelige, Jr. (1998). "Electrostatic interactions drive scaffolding/coat protein binding and procapsid maturation in bacteriophage P22." Virology 250: 337-49.
• Tuma, R., M. H. Parker, et al. (1998). "A helical coat protein recognition domain of the bacteriophage P22 scaffolding protein." J Mol Biol 281: 81-94.
• Parker, M. H., S. Casjens, et al. (1998). "Functional domains of bacteriophage P22 scaffolding protein." J Mol Biol 281: 69-79.
• Parker, M. H., M. Jablonsky, et al. (1997). "Cloning, purification, and preliminary characterization by circular dichroism and NMR of a carboxyl-terminal domain of the bacteriophage P22 scaffolding protein." Protein Sci 6: 1583-6.
• Parker, M. H., W. F. Stafford, 3rd, et al. (1997). "Bacteriophage P22 scaffolding protein forms oligomers in solution." J Mol Biol 268: 655-65.

Poliakov

• Chang JR, Poliakov A, Prevelige PE, Mobley JA, Dokland T. (2008)  Incorporation of scaffolding protein gpO in bacteriophages P2 and P4. Virology. 370:352-61.
• Poliakov A, Jardine P, Prevelige PE. (2008) Hydrogen/deuterium exchange on protein solutions containing nucleic acids: utility of protamine sulfate. Rapid Commun Mass Spectrom.22:2423-28.
• Poliakov, A., E. van Duijn, et al. (2007) Macromolecular mass spectrometry and electron microscopy as complementary tools for investigation of the heterogeneity of bacteriophage portal assemblies. J Struct Biol 157: 371-83.
• Lander, G. C., L. Tang, et al. (2006). "The structure of an infectious P22 virion shows the signal for headful DNA packaging." Science 312: 1791-5.

Tuma

• Tuma, R, Tsuruta, H, French, KH, Prevelige, PE. (2008) "Detection of intermediates and kinetic control during assembly of bacteriophage P22 procapsid." J Mol Biol 381:1395-1406.
• Tuma, R., L. U. Coward, et al. (2001). "Hydrogen-deuterium exchange as a probe of folding and assembly in viral capsids." J Mol Biol 306: 389-96.
• Tuma, R., H. Tsuruta, et al. (2001). "Characterization of subunit structural changes accompanying assembly of the bacteriophage P22 procapsid." Biochemistry 40: 665-74.
• Lanman, J., R. Tuma, et al. (1999). "Identification and characterization of the domain structure of bacteriophage P22 coat protein." Biochemistry 38: 14614-23.
• de Sousa, P. C., Jr., R. Tuma, et al. (1999). "Cavity defects in the procapsid of bacteriophage P22 and the mechanism of capsid maturation." J Mol Biol 287: 527-38.
• Tuma, R., P. E. Prevelige, Jr., et al. (1998). "Mechanism of capsid maturation in a double-stranded DNA virus." Proc Natl Acad Sci U S A 95: 9885-90.
• Tuma, R., M. H. Parker, et al. (1998). "A helical coat protein recognition domain of the bacteriophage P22 scaffolding protein." J Mol Biol 281: 81-94.
• Tuma, R., P. E. Prevelige, Jr., et al. (1996). "Structural transitions in the scaffolding and coat proteins of P22 virus during assembly and disassembly." Biochemistry 35: 4619-27.